43 template <
typename format_type>
50 template <
typename ...ts>
53 format_type::write_alignment_record(std::forward<ts>(args)...);
76 requires (detail::sam_file_output_format_exposer<t> & v,
78 sam_file_output_options & options,
79 sam_file_header<> & header,
84 dna5_vector & ref_seq,
92 sam_tag_dictionary & tag_dict,
197 template <
typename t>
205 template <
typename ...ts>
213 template <
typename t>
Provides aliases for qualified.
Provides the seqan3::cigar alphabet.
Provides seqan3::dna5, container aliases and string literals.
sam_flag
An enum flag that describes the properties of an aligned read (given as a SAM record).
Definition: sam_flag.hpp:74
SEQAN3_CONCEPT type_list_of_sam_file_output_formats
Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_fi...
Definition: output_format_concept.hpp:214
constexpr bool is_type_list_of_sam_file_output_formats_v
Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqa...
Definition: output_format_concept.hpp:198
The internal SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
Provides seqan3::phred42 quality scores.
Provides seqan3::sam_file_output_options.
Provides helper data structures for the seqan3::sam_file_output.
Provides the seqan3::sam_tag_dictionary class and auxiliaries.
Type that contains multiple types.
Definition: type_list.hpp:29
Provides seqan3::type_list.