Provides files and formats for handling sequence data. More...
Classes | |
class | seqan3::format_embl |
The EMBL format. More... | |
class | seqan3::format_fasta |
The FastA format. More... | |
class | seqan3::format_fastq |
The FastQ format. More... | |
class | seqan3::format_genbank |
The GenBank format. More... | |
class | seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
A class for reading sequence files, e.g. FASTA, FASTQ ... More... | |
struct | seqan3::sequence_file_input_default_traits_aa |
A traits type that specifies input as amino acids. More... | |
struct | seqan3::sequence_file_input_default_traits_dna |
The default traits for seqan3::sequence_file_input. More... | |
interface | sequence_file_input_format |
The generic concept for sequence file in formats. More... | |
struct | seqan3::sequence_file_input_options< sequence_legal_alphabet > |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
interface | sequence_file_input_traits |
The requirements a traits_type for seqan3::sequence_file_input must meet. More... | |
class | seqan3::sequence_file_output< selected_field_ids_, valid_formats_ > |
A class for writing sequence files, e.g. FASTA, FASTQ ... More... | |
interface | sequence_file_output_format |
The generic concept for sequence file out formats. More... | |
struct | seqan3::sequence_file_output_options |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
class | seqan3::sequence_record< field_types, field_ids > |
The record type of seqan3::sequence_file_input. More... | |
Provides files and formats for handling sequence data.